Find shared synteny blocks by comparing two genetics maps

find_synteny_blocks(map_list, max_cluster_range, max_nn_dist,
  min_block_size = 2, plots = FALSE)

Arguments

map_list

list, a 'map_list' object created by make_one_map

max_cluster_range

numeric, the maximum distance between markers for them to be considered in the same cluster

max_nn_dist

numeric, the maximum distance for a singleton to be considered an outlier

min_block_size

numeric, the minimum size of a synteny block

plots

logical, should plots be included as output?

Value

A list of length 3 containing synteny block assignments for each marker

Examples

# load data data(ann_pet_map) # convert data to a single ordered scale map_list <- make_one_map(ann_pet_map) # find synteny blocks synt_blocks <- find_synteny_blocks(map_list, max_clust_range = 2, max_nn_dist = 10, plots = TRUE)
#> Error in find_synteny_blocks(map_list, max_clust_range = 2, max_nn_dist = 10, plots = TRUE): unused argument (max_clust_range = 2)