Find shared synteny blocks by comparing two genetics maps

find_synteny_blocks(map_list, max_cluster_range, max_nn_dist,
min_block_size = 2, plots = FALSE)

## Arguments

map_list list, a 'map_list' object created by make_one_map numeric, the maximum distance between markers for them to be considered in the same cluster numeric, the maximum distance for a singleton to be considered an outlier numeric, the minimum size of a synteny block logical, should plots be included as output?

## Value

A list of length 3 containing synteny block assignments for each marker

## Examples

# load data
data(ann_pet_map)

# convert data to a single ordered scale
map_list <- make_one_map(ann_pet_map)

# find synteny blocks
synt_blocks <- find_synteny_blocks(map_list, max_clust_range = 2, max_nn_dist = 10, plots = TRUE)#> Error in find_synteny_blocks(map_list, max_clust_range = 2, max_nn_dist = 10,     plots = TRUE): unused argument (max_clust_range = 2)