All functions
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adjust_blocks()
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Adjust synteny blocks based on chromosome breaks |
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build_neighbour_rank_lists()
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Build list of cluster 'neighbourhoods' connected by proximity |
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find_initial_blocks()
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Peform initial hierarchical clustering of markers |
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find_k()
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Find the optimal number of synteny blocks (i.e. k) |
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find_synteny_blocks()
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Find shared synteny blocks by comparing two genetics maps |
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group_clusters()
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Interavely consolidate and group marker cluster neighbourhoods |
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make_one_map()
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Consolidate and prepare map data for synteny block detection |
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plot_maps()
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Plot markers in two genetic maps |
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plot_summary_stats()
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Create a heat map of summary statistics generated by test_parameters |
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split_blocks()
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Split and reorder synteny blocks |
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test_parameters()
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Test the performance of a range of clustering parameters for a given map_list |